new! |
Nov 25, 2024 |
12/06,2024 |
Ville Koskinen |
Thermo Orbitrap 向けに最適なMS2PIPモデル |
Best MS2PIP model for Thermo Orbitrap |
benchmark,fragmentation,machine learning, MS2PIP, Percolator |
|
Oct 14, 2024 |
11/16,2024 |
Ville Koskinen |
チュートリアル:最適なMS2PIPモデルの選択 |
Tutorial: Selecting the best MS2PIP model |
MS2PIP, machine learning, Percolator |
|
Sep 24, 2024 |
10/25,2024 |
Ville Koskinen |
チュートリアル:最適なDeepLCモデルの選択 |
Tutorial: Selecting the best DeepLC model |
DeepLC, machine learning, Percolator, retention time |
|
Aug 14, 2024 |
8/30,2024 |
Ville Koskinen |
Mascot Server 3.0における、予測RTとフラグメント強度情報 |
Predicted RT and fragment intensity in Mascot Server 3.0 |
machine learning, Percolator, scoring |
|
Jul 25, 2024 |
7/29,2024 |
Ville Koskinen |
機械学習による再スコアリングはどのように機能するのか? |
How does rescoring with machine learning work? |
FDR, Percolator, scoring |
|
Jun 11, 2024 |
6/21,2024 |
Ville Koskinen |
ASMS 2024 におけるMatrix Scienceの発表内容 |
Matrix Science at ASMS 2024 |
ASMS, error tolerant, machine learning, Mascot Daemon, Mascot Distiller |
|
May 20, 2024 |
5/30,2024 |
Richard Jacob |
シーケンスタグ30周年 |
30 years of Sequence Tags |
anniversary, de novo, error tolerant, history, Mascot Distiller |
|
Apr 18, 2024 |
4/26,2024 |
Patrick Emery |
LC-MS/MSデータのMascotワークフロー |
Mascot workflow for LC-MS/MS data |
Mascot Distiller, peak picking, protein inference, quantitation, scoring, statistics, tutorial |
|
Mar 18, 2024 |
3/21,2024 |
Patrick Emery |
チュートリアル : Mascot Distillerのカスタムレポートを作成する |
Tutorial: Creating custom reports in Mascot Distiller |
Mascot Distiller, Python, quantitation, reports, tutorial |
|
Feb 16, 2024 |
2/29,2024 |
Ville Koskinen |
公開マスコットサービスの運用方法 |
How to run the public Mascot service |
anniversary, history, pc hardware |
|
Jan 15, 2024 |
1/25,2024 |
Richard Jacob |
マスコットのセキュリティ - ゲストユーザーと管理者 |
Mascot security – guest users and administrators |
configuration files, security, sysadmin |
|
Dec 5, 2023 |
12/15,2023 |
Richard Jacob |
ABRF iPRG 2023 crosslinking study |
ABRF iPRG 2023 crosslinking study |
ABRF, crosslinking, tutorial |
|
Nov 13, 2023 |
1/25,2024 |
Patrick Emery |
Mascot Error Tolerant 検索で、狭いウィンドウ幅のDIAデータ解析から想定外の修飾を見つける |
Finding unsuspected modifications in narrow-window DIA data using the Mascot Error Tolerant Search |
chimeric spectra, DIA, error tolerant, variable modifications |
|
Oct 13, 2023 |
1/9,2024 |
Patrick Emery |
Mascot Serverによる、狭いウィンドウ幅・スペクトル中心的なDIA解析 |
Spectrum-centric searching of narrow window DIA data with Mascot Server |
chimeric spectra, DIA, label-free, LFQ, Mascot Distiller, Thermo |
|
Sep 18, 2023 |
9/28,2023 |
Ville Koskinen |
Mascot Distiller 20周年 |
Mascot Distiller 20th anniversary |
anniversary, history, Mascot Distiller |
|
Aug 23, 2023 |
9/12,2023 |
Ville Koskinen |
キメラスペクトルのペプチド同定(DDA、DIA) |
Identifying peptides from chimeric spectra (DDA, DIA) |
chimeric spectra, FDR |
|
Jul 13, 2023 |
7/26,2023 |
Ville Koskinen |
internal fragmentsのマッチング考慮によりHCD の検索結果が改善されます |
Get better HCD results by matching internal fragments |
configuration files, fragmentation, ion series, scoring |
|
Jun 16, 2023 |
7/6,2023 |
Richard Jacob |
Mascot Daemon Export Extenderスクリプト |
Mascot Daemon Export Extender |
automation, Mascot Daemon, Mascot Distiller, quantitation |
|
May 15, 2023 |
5/23,2023 |
Ville Koskinen |
そのソフトウェアは何年前にリリースされたものですか? |
How old is the software in that publication? |
guidelines, reproducibility, significance |
|
April 25, 2023 |
4/28,2023 |
Ville Koskinen |
SplitNumberOfQueriesパラメーターを変更して検索速度を上げる |
Get more search speed with SplitNumberOfQueries |
benchmark, configuration files, pc hardware, sysadmin |
|
March 15, 2023 |
3/28,2023 |
Patrick Emery |
DIA-MSでの使用を目的とした高品質なスペクトルライブラリーの作成 |
Generating high quality spectral libraries for DIA-MS |
DIA, Mascot Daemon, Mascot Distiller, Mascot Server, spectral library |
|
February 24, 2023 |
3/10,2023 |
Ville Koskinen |
創立25年を迎えたマトリックスサイエンス |
25 years of Matrix Science |
anniversary, history |
|
January 17, 2023 |
1/27,2023 |
Ville Koskinen |
MASCOTをクラウド上で運用する |
Mascot in the Cloud |
cluster, licensing, pc hardware, virtual machine |
|
December 16, 2022 |
12/23,2022 |
Patrick Emery |
Mascot Distillerによるインタクトなクロスリンクスペクトルデータのピーク抽出 |
Peak picking intact crosslink spectra with Mascot Distiller |
crosslink, crosslinking, Mascot Distiller, peak picking, Thermo |
|
November 16, 2022 |
11/29,2022 |
Ville Koskinen |
古代プロテオミクス(パレオプロテオミクス) |
Paleoproteomics |
error tolerant, metaproteomics, paleoproteomics, PMF, spectral library |
|
October 14, 2022 |
11/1,2022 |
Richard Jacob |
TMT/TMTproラベリングと相補的なレポーターイオンクラスター |
Complementary reporter ion clusters in TMT/TMTpro labeling |
Mascot Daemon, Mascot Distiller, quantitation, reporter, scoring, TMT |
|
September 23, 2022 |
10/4,2022 |
Patrick Emery |
新しくなった 定量解析レポート[Mascot Distiller 2.8] |
Reporting quantitation datasets with Mascot Distiller 2.8 |
Mascot Distiller, Python, quantitation, reporting, XSLT |
|
August 31, 2022 |
9/8,2022 |
Ville Koskinen |
新しいAPIによるUniProtプロテオームデータベースのダウンロード |
Downloading UniProt proteomes via new API |
database manager, Fasta, HTTPS, sysadmin |
|
July 20, 2022 |
8/2,2022 |
Ville Koskinen |
検索エンジンが示す同定の根拠 |
Does your search engine show the evidence? |
FDR, interpretation, protein inference, reproducibility, scoring |
|
June 20, 2022 |
7/5,2022 |
Patrick Emery |
データを分けて打ち勝つ。Mascot Distiller 2.8.2と分画ラベルフリー定量分析 |
Divide and conquer: Fractionated Label Free Quantitation in Mascot Distiller 2.8.2 |
label-free, Mascot Distiller, quantitation, replicate |
|
May 20, 2022 |
6/2,2022 |
Ville Koskinen |
mzIdentML 1.2 |
mzIdentML 1.2 |
crosslink, export, mzIdentML, PSI |
|
April 19, 2022 |
5/6,2022 |
Ville Koskinen |
NCBIprot(NCBInr)の利用がMASCOT Server 2.8.1 で改善されました |
NCBI nr in Mascot Server 2.8.1 |
database manager, Fasta, pc hardware |
|
March 23, 2022 |
3/31,2022 |
Richard Jacob |
SARS-Cov-2 スパイクタンパク質のジスルフィド結合の構造解析 |
Analyzing the disulfide bond structure of the SARS-Cov-2 Spike protein |
crosslink, SARS-Cov-2 |
|
February 16, 2022 |
2/28,2022 |
Ville Koskinen |
シングルセルのペプチドフラグメンテーションスペクトル |
Single-cell peptide fragmentation spectra |
fragmentation, scoring, single-cell proteomics |
|
January 24, 2022 |
2/14,2022 |
Patrick Emery |
Defaultとprof_prof どちらが良いか : Mascot Distillerを用いたThermo .RAWデータのピークピッキング処理オプション |
Default or prof_prof? Peak picking Thermo .RAW data with Mascot Distiller |
Mascot Distiller, peak picking, Thermo |
|
December 16, 2021 |
12/28,2021 |
Ville Koskinen |
LinuxにおけるMascotクラスターシステムのセキュリティ |
Mascot cluster installation security on Linux |
cluster, HTTPS, security, sysadmin |
|
November 16, 2021 |
12/2,2021 |
Ville Koskinen |
ファイル転送プロトコル(FTP)の廃止 |
Retiring the File Transfer Protocol (FTP) |
database manager, HTTPS, security, SSL |
|
October 25, 2021 |
10/26,2021 |
Patrick Emery |
Mascot Distillerのためのハードウェア選択 |
Choosing hardware for Mascot Distiller |
Mascot Distiller, pc hardware |
|
September 22, 2021 |
10/7,2021 |
Ville Koskinen |
より多くのHLAペプチドを同定する |
Identify more HLA peptides |
benchmark, endogenous, FDR, hla, Percolator |
|
August 16, 2021 |
8/17,2021 |
Ville Koskinen |
ディスクアクセスが律速になっていた問題への対応 |
Addressing disk bottlenecks |
benchmark, pc hardware |
|
July 14, 2021 |
7/26,2021 |
John Cottrell |
Error Tolerant検索(拡張2段階検索)が統計的有意性を示すよう改善されました |
Error tolerant searches now show statistical significance |
delta mass, error tolerant, FDR, modification, statistics |
|
June 17, 2021 |
6/25,2021 |
Ville Koskinen |
NCBInr (NCBIprot) に関するTips |
NCBI nr tips |
configuration files, database manager, pc hardware, virtual machine |
|
May 24, 2021 |
5/31,2021 |
Patrick Emery |
イオンモビリティフィルタリングによるプリカーサー定量結果の改善 |
Improving precursor quantitation results with ion mobility filtering |
ion-mobility, Mascot Distiller, quantitation, timsTOF |
|
April 28, 2021 |
5/6,2021 |
Patrick Emery |
「グローバル」な発想で : Mascot Distiller 2.8 におけるラベルフリー定量法 |
Global thinking: Label Free Quantitation in Mascot Distiller 2.8 |
global time-alignment, label-free, Mascot Distiller, quantitation, replicate, retention time |
|
March 17, 2021 |
4/15,2021 |
Ville Koskinen |
このセーターにはどれくらいのカシミアが使われているか? |
How much cashmere is in this sweater? |
iodoacetamide, metaproteomics, quantitation |
|
February 24, 2021 |
3/5,2021 |
Ville Koskinen |
UnipeptとMascot |
Unipept and Mascot |
export, metaproteomics, protein inference |
|
January 21, 2021 |
2/1,2021 |
Patrick Emery |
NIST Human HCDスペクトルライブラリ |
NIST Human HCD Spectral Libraries |
database manager, NIST, spectral library |
|
December 22, 2020 |
1/22,2021 |
Richard Jacob |
Mascot Server のライセンス数:いくつ必要か? |
How large a Mascot Server licence do I need? |
benchmark, cluster, core labs, licensing, pc hardware |
|
November 18, 2020 |
12/11,2020 |
Ville Koskinen |
シングルサインオン(SSO)とMascot |
Single sign-on (SSO) and Mascot |
configration files, security, sysadmin |
|
October 19, 2020 |
11/6,2020 |
John Cottrell |
Mascot Distiller de novoでパズルを解く |
Solving a puzzle with Mascot Distiller de novo |
de novo, interpretation, Mascot Distiller, tutorial |
|
September 16, 2020 |
10/16,2020 |
Richard Jacob |
データベース管理の小技集 |
The minutiae of database |
configuration files, database manager, Fasta, sysadmin |
|
August 19, 2020 |
10/16,2020 |
Ville Koskinen |
クロスリンクペプチドの検索結果検証 |
Validating intact crosslinked peptide matches |
13C, crosslink, FDR |
|
July 15, 2020 |
10/16,2020 |
Patrick Emery |
MASCOT ver.2.7 における variable modification |
Variable Modifications in Mascot 2.7 |
error tolerant, modification, permutation, site analysis, variable modifications |
|
June 17, 2020 |
10/16,2020 |
John Cottrell |
Daemonの新機能 Quantitation Summary : 出力データを使った統計解析の実施やグラフの作成例 |
Using the Quantitation Summary to create reports and charts |
export, Mascot Daemon, Mascot Distiller, quantitation, statistics, tutorial |
|
May 19, 2020 |
10/16,2020 |
John Cottrell |
Daemonの新機能 Quantitation Summary で、発現解析データの集計をより簡単にする |
Tabulate expression data from multiple analyses with Mascot Daemon |
export, Mascot Daemon, Mascot Distiller, quantitation, statistics, tutorial |